miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|91741238|gb|EB377893.1|EB377893 CCTGTCCTTTCCCGGGGCTGGCGGCCGGAGGTCAGGTTGCTCCGAGGCGGCGGCTGGACGGTGGCTCCCCGGGCCGAGCA
GCGGGTAGGGCGGGCAAGCGCTGACGGGACGGCGATCCTCGGCCGCGCGTCCCCTCCGGGCCGCCGTAGGCGTCACGTGA
CCGCCGGGCGAGCGCCATGGCGGCGCCGAAGCCGCTGTCCCGCTTCTGGGAGTGGGGGAAGAACATCGTGTGCGTGGGCA
GGAACTACGCGGAGCACGCGCGCGAGATGCGCAGCGCCGTGCCGCGCGAGCCCGTGCTGTTCCTGAAGCCGAGCAGCGCC
TACGCGCCCGAGGGCGCGCCCGTGCTCGTGCCCCCCTACACGCGCGACCTGCAGCACGAGCTGGAGCTGGGCGTGGTGGT
GGGCGCGCGCGCGCGCGCCGTGCCCGAGGCCGCGGCCATGGACTACGTGGCCGGCTACGCGCTGTGCCTGGACATGACGG
CCAGGGACGTGCACGACGAGTGCAAGCGGCAGGGGCTGCCCTGGACCCTGGCCAAGGGCTTCACCTCCTCCTGCCCCGTG
AGCGCCTTCGTGCCCAAGGCGCGCGTGCCCGACCCGCACCGCCTGCGCCTCTGGCTGCGGGTCAACGGCGAGCTCAGGCA
GCAGGGCGACACGGCCGCCATGCTCTTCTCCGTCCCCTACCTGGTCAGCTACGTGTCCCGGGTGCTGA




Most similar to sp|Q2HJ98|FAHD1_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q2HJ98|FAHD1_BOVIN Fumarylacetoacetate hydrolase
           domain-containing protein 1 OS=Bos taurus GN=FAHD1 PE=2
           SV=1
          Length = 221

 Score =  278 bits (710), Expect = 3e-74
 Identities = 124/173 (71%), Positives = 148/173 (85%)
 Frame = +3

Query: 189 KPLSRFWEWGKNIVCVGRNYAEHAREMRSAVPREPVLFLKPSSAYAPEGAPVLVPPYTRD 368
           +PLSRFWEWGKNIVCVGRNYA+H REM+SA P EPVLFLKPS+AYAPEG+PVLVP YTR+
Sbjct: 5   RPLSRFWEWGKNIVCVGRNYADHVREMQSAAPSEPVLFLKPSTAYAPEGSPVLVPAYTRN 64

Query: 369 LQHELELXXXXXXXXXXXXXXXXMDYVAGYALCLDMTARDVHDECKRQGLPWTLAKGFTS 548
           L HELEL                MDYVAGYALCLDMTARDV DECK++GLPWTLAK FT+
Sbjct: 65  LHHELELAVVMGKRCRAVSEAAAMDYVAGYALCLDMTARDVQDECKKKGLPWTLAKSFTA 124

Query: 549 SCPVSAFVPKARVPDPHRLRLWLRVNGELRQQGDTAAMLFSVPYLVSYVSRVL 707
           SCPVSAFVPK ++PDPH L+LWL+VNGELRQ+G+T++M+FS+PY++SYVS+++
Sbjct: 125 SCPVSAFVPKEKIPDPHNLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIM 177